[Flash-X-users] Getting Flash-X to work

Wed Aug 28 10:28:18 CDT 2024

Kiya & Ryan,

I finally got the chance to take a look at this, and what I'm gathering is
that my installation of thornado is not correct. I am not sure how to
troubleshoot this beyond "uninstall and reinstall" which I can assume is
not the way to go about this. Ryan mentioned that it may not be in the
proper system PATH, I'm assuming this could be corrected in the makefile
that is in the "sites" directory?

I do hope that my struggles prove to be useful and helpful for those in the
future, so I very much thank you all for your help.

On Tue, Aug 27, 2024 at 12:42 AM kiyarash Taghiniyarami <
kiyarash.niyarami at gmail.com> wrote:

> Dear Peter & Ryan,
> No problem. I am just trying to help and hope it will be useful.
>
> I see in your setup syntax Thornado order is set to 1. Order one is not
> working properly (some files are missing in thornado order1 directory)
> since I asked Austin so far, he mentioned they tried to use orderV and then
> in flash.par setting v = 0.0 gives the same result as order1. So I am
> afraid Peter your setup is not complete yet and because of that
> wlEOSInversionModule.F90 is missing in the directory created by setup,
> check that out again.
>
> If you get ls of the obj directory (or whatever created by setup) you
> could see list of codes linked there and check if wlEOSInversion in present
> there or not.
>
> Best,
> Kiya
>
> On Tue, Aug 27, 2024 at 6:31 AM Peter Manzella <peter.manzella at maine.edu>
> wrote:
>
>> Ryan, Of course, many many thanks to Kiya, been extremely helpful. And
>> many thanks to you for lending a helping hand too! I didn't see your email
>> till very much after I had left my office, but noticed it and had to come
>> in to take care of
>> ZjQcmQRYFpfptBannerStart
>> This Message Is From an External Sender
>> This message came from outside your organization.
>>
>> ZjQcmQRYFpfptBannerEnd
>> Ryan,
>> Of course, many many thanks to Kiya, been extremely helpful. And many
>> thanks to you for lending a helping hand too! I didn't see your email till
>> very much after I had left my office, but noticed it and had to come in to
>> take care of some other things, so it is a bit late, sorry.
>> As asked (let me know if I didn't grab the right thing)
>> 1) screenshot of 'ls' in the problem directory:
>> [image: image.png]
>> 2) my setup command:
>>
>> ./setup Relaxation -auto -3d +cartesian +cube16 +thornado nE=16 swE=0
>> nSpecies=6 nNodes=2 nMoments=4 momentClosure=MINERBO thornadoOrder=ORDER_1
>> +weaklib -parfile=flash.par
>>
>> 3)full output in a compile.txt
>>
>> I really appreciate any and all help I can get, I've spent a bit on
>> trying to get through it, but quite often it felt like I was going in
>> circles.
>>
>> On Mon, Aug 26, 2024 at 4:42 PM Ryan Farber <rjfarber at umich.edu> wrote:
>>
>>> Hi Peter,
>>>
>>> If you share the following I can take a look tonight:
>>> 1) screenshot of “ls” in your problem directory
>>> 2) your setup command
>>> 3) the full output and error streams of your compilation command (e.g., make
>>> 2>&1 compile.txt
>>>
>>> As an aside, thanks to Kiya for your kind contributions to this thread!
>>> I’m sure what you've provided will be useful in the future too!
>>>
>>> Best wishes,
>>> Ryan
>>>
>>> Sent from my iPhone
>>>
>>> On Aug 26, 2024, at 1:53 PM, Peter Manzella <peter.manzella at maine.edu>
>>> wrote:
>>>
>>> 
>>> OK, that makes more sense, I'll need to make sure those are in the file,
>>> not command line. I went to setup after adding those, and have this error,
>>> its related to equation of state, and I haven't been able to find anything
>>> in documentation
>>> ZjQcmQRYFpfptBannerStart
>>> This Message Is From an External Sender
>>> This message came from outside your organization.
>>>
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>>> OK, that makes more sense, I'll need to make sure those are in the file,
>>> not command line. I went to setup after adding those, and have this error,
>>> its related to equation of state, and I haven't been able to find anything
>>> in documentation about it.
>>> <image.png>
>>>
>>> This is the sort of thing that is frustrating, not being able to find
>>> where I need to look to troubleshoot. I tried using grep to find it, I've
>>> looked in the documentation link you sent me (I already knew about that,
>>> but it wasn't helpful beyond the quick start), but couldn't find it. Is
>>> this more of a thornado issue? Cause like I said I'm not super acquainted
>>> with large codes that require so many moving pieces.
>>>
>>> On Mon, Aug 26, 2024 at 2:28 PM kiyarash Taghiniyarami <
>>> kiyarash.niyarami at gmail.com> wrote:
>>>
>>>> Dear Peter,
>>>> These are not for command line (If you mean "command line" as setup for
>>>> configuring a new run).
>>>> Before setup you need to make a directory in the Simulation unit
>>>> (/source/Simulation/SimulationMain). In that directory you need some codes
>>>> such as Simulation_data.F90, Simulation_init.F90, Simulation_initBlock.F90,
>>>> and etc.
>>>> Say you need the "Half" variable in the Simulation_initBlock.F90. you
>>>> can call it by KindModule from Thornado if you write the following in that
>>>> fortran code:
>>>> Use KindModule, only: Half
>>>> so you can use the "Half" anywhere in that Simulation_initBlock.F90. It
>>>> has nothing to do with typing in the command line and hitting enter.
>>>> If I understand correctly what you mean, there are some setup variables
>>>> you can type in the command line (such as nxb,nyb, swE,nE and etc.) which
>>>> are different from modules. setup variables can be set up in Config files
>>>> in any physics subdirectories.
>>>>
>>>> There is documentation for Flashx as well:
>>>> https://urldefense.us/v3/__https://flash-x.github.io/Flash-X-docs/*__;Iw!!G_uCfscf7eWS!cC3gYvUlayCIwGO9HG3_YCddUv2xPovY8eJxYfODgXle-dJUAwAhlGYXXUe0rHxhWVNC6eczmiNOm6mSQNECO-trxdEn-5vuIcVun9Wn$ 
>>>> <https://urldefense.us/v3/__https://flash-x.github.io/Flash-X-docs/*__;Iw!!G_uCfscf7eWS!cy5tKVb9Qwu2rLLCi1LNfkq2D5uVYlmB4FWF6x2Pvqvq1OrrRPvzAwx-yFHLivQcBbWQTRySdjTQzVXdJjzC_Qh1vl2zpGdoLrGAwyOT$>
>>>>
>>>> Kind regards,
>>>> Kiya
>>>>
>>>>
>>>
>>> --
>>> Peter Manzella
>>> PhD Candidate, Department of Physics and Astronomy
>>> 309 Bennett Hall
>>> University of Maine
>>> peter.manzella at maine.edu
>>>
>>> “If you run out of ideas follow the road; you'll get there.” – Edgar
>>> Allan Poe
>>> --
>>> Flash-X-users mailing list
>>> Flash-X-users at lists.cels.anl.gov
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>>> <https://urldefense.us/v3/__https://lists.cels.anl.gov/mailman/listinfo/flash-x-users__;!!G_uCfscf7eWS!Z1_GXydE2pV62oyGpM2ZteP_zTQdp-c9MRnUEZgvDy2eM0cBnqD656HBLPAkAMqZu7096jmjWOZzHL2ARHhx_LB-ZMcFtJGRTFtRFBtj$>
>>>
>>>
>>
>> --
>> Peter Manzella
>> PhD Candidate, Department of Physics and Astronomy
>> 309 Bennett Hall
>> University of Maine
>> peter.manzella at maine.edu
>>
>> “If you run out of ideas follow the road; you'll get there.” – Edgar
>> Allan Poe
>> --
>> Flash-X-users mailing list
>> Flash-X-users at lists.cels.anl.gov
>> https://urldefense.us/v3/__https://lists.cels.anl.gov/mailman/listinfo/flash-x-users__;!!G_uCfscf7eWS!cC3gYvUlayCIwGO9HG3_YCddUv2xPovY8eJxYfODgXle-dJUAwAhlGYXXUe0rHxhWVNC6eczmiNOm6mSQNECO-trxdEn-5vuIS6J-SU5$ 
>>
>

-- 
Peter Manzella
PhD Candidate, Department of Physics and Astronomy
309 Bennett Hall
University of Maine
peter.manzella at maine.edu

“If you run out of ideas follow the road; you'll get there.” – Edgar Allan
Poe
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