[Flash-X-users] [EXTERNAL] Error while Running CCSN DeleptonizationWave

[kiyarash Taghiniyarami]

Dear Austin,
Yes after making the chk directory it runs properly.
Thanks.
Kiya


On Thu, Dec 14, 2023 at 1:55 PM Harris, Austin <harrisja at ornl.gov> wrote:

> Hi Kiya,
>
>
>
> It appears you’re trying to write to a directory that may not exist (chk).
>
>
>
> --Austin
>
>
>
> *From: *Flash-X-users <flash-x-users-bounces at lists.cels.anl.gov> on
> behalf of kiyarash Taghiniyarami <kiyarash.niyarami at gmail.com>
> *Date: *Thursday, December 14, 2023 at 6:30 AM
> *To: *"flash-x-users at lists.cels.anl.gov" <flash-x-users at lists.cels.anl.gov
> >
> *Subject: *[EXTERNAL] [Flash-X-users] Error while Running CCSN
> DeleptonizationWave
>
>
>
> Dear Users,
>
> I tried to make core collapse supernova with +weaklib, +spark, and
> +thornado with the setup command of:
>
>
>
>  ./setup DeleptonizationWave -auto -1d +spherical +pm4dev -objdir Delep
> -nxb=16 --with-unit=physics/Hydro/HydroMain/Spark/NonTelescoping +nolwf
> --with-unofficial=physics/Hydro/HydroMain/Spark/NonTelescoping
> nontelescoping=True +weaklib +thornado -maxblocks=64  nE=16 swE=1
> nSpecies=6 nNodes=2 nMoments=4 momentClosure=MINERBO thornadoOrder=ORDER_V
> Bittree=True
>
>
>
> . After successful setup and compilation then tried to run it but face the
> following error:
>
>
>
>
>
> HDF5-DIAG: Error detected in HDF5 (1.14.3) MPI-process 0:
>   #000: /home/taghinia/FLASH/HDF5/hdf5-1.14.3/src/H5F.c line 660 in
> H5Fcreate(): unable to synchronously create file
>     major: File accessibility
>     minor: Unable to create file
>   #001: /home/taghinia/FLASH/HDF5/hdf5-1.14.3/src/H5F.c line 614 in
> H5F__create_api_common(): unable to create file
>     major: File accessibility
>     minor: Unable to open file
>   #002: /home/taghinia/FLASH/HDF5/hdf5-1.14.3/src/H5VLcallback.c line 3605
> in H5VL_file_create(): file create failed
>     major: Virtual Object Layer
>     minor: Unable to create file
>   #003: /home/taghinia/FLASH/HDF5/hdf5-1.14.3/src/H5VLcallback.c line 3571
> in H5VL__file_create(): file create failed
>     major: Virtual Object Layer
>     minor: Unable to create file
>   #004: /home/taghinia/FLASH/HDF5/hdf5-1.14.3/src/H5VLnative_file.c line
> 94 in H5VL__native_file_create(): unable to create file
>     major: File accessibility
>     minor: Unable to open file
>   #005: /home/taghinia/FLASH/HDF5/hdf5-1.14.3/src/H5Fint.c line 1851 in
> H5F_open(): unable to open file: name = 'chk/delep_hdf5_chk_0000',
> tent_flags = 13
>     major: File accessibility
>     minor: Unable to open file
>   #006: /home/taghinia/FLASH/HDF5/hdf5-1.14.3/src/H5FD.c line 769 in
> H5FD_open(): open failed
>     major: Virtual File Layer
>     minor: Unable to initialize object
>   #007: /home/taghinia/FLASH/HDF5/hdf5-1.14.3/src/H5FDsec2.c line 323 in
> H5FD__sec2_open(): unable to open file: name = 'chk/delep_hdf5_chk_0000',
> errno = 2, error message = 'No such file or directory', flags = 13, o_flags
> = 242
>     major: File accessibility
>     minor: Unable to open file
>  Error: unable to initialize file
>
>
>
> Can anyone help me with that? Is that something due to netcdf and HDF5
> locking? I also tried export HDF5_USE_FILE_LOCKING=FALSE  but it did not
> help.
>
> Best,
> Kiya
>
>
>
>
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