<div dir="ltr">Dear Austin,<br>Yes after making the chk directory it runs properly.<br>Thanks.<br>Kiya<br><br></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Thu, Dec 14, 2023 at 1:55 PM Harris, Austin <<a href="mailto:harrisja@ornl.gov">harrisja@ornl.gov</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div class="msg-4952873475370920071">
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<p class="MsoNormal">Hi Kiya,<u></u><u></u></p>
<p class="MsoNormal"><u></u> <u></u></p>
<p class="MsoNormal">It appears you’re trying to write to a directory that may not exist (chk).<u></u><u></u></p>
<p class="MsoNormal"><u></u> <u></u></p>
<p class="MsoNormal">--Austin<u></u><u></u></p>
<p class="MsoNormal"><u></u> <u></u></p>
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<p class="MsoNormal"><b><span style="font-size:12pt;color:black">From: </span></b><span style="font-size:12pt;color:black">Flash-X-users <<a href="mailto:flash-x-users-bounces@lists.cels.anl.gov" target="_blank">flash-x-users-bounces@lists.cels.anl.gov</a>> on behalf of kiyarash Taghiniyarami <<a href="mailto:kiyarash.niyarami@gmail.com" target="_blank">kiyarash.niyarami@gmail.com</a>><br>
<b>Date: </b>Thursday, December 14, 2023 at 6:30 AM<br>
<b>To: </b>"<a href="mailto:flash-x-users@lists.cels.anl.gov" target="_blank">flash-x-users@lists.cels.anl.gov</a>" <<a href="mailto:flash-x-users@lists.cels.anl.gov" target="_blank">flash-x-users@lists.cels.anl.gov</a>><br>
<b>Subject: </b>[EXTERNAL] [Flash-X-users] Error while Running CCSN DeleptonizationWave<u></u><u></u></span></p>
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<p class="MsoNormal">Dear Users,<u></u><u></u></p>
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<p class="MsoNormal">I tried to make core collapse supernova with +weaklib, +spark, and +thornado with the setup command of: <u></u><u></u></p>
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<p class="MsoNormal"><u></u> <u></u></p>
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<p class="MsoNormal"> ./setup DeleptonizationWave -auto -1d +spherical +pm4dev -objdir Delep -nxb=16 --with-unit=physics/Hydro/HydroMain/Spark/NonTelescoping +nolwf --with-unofficial=physics/Hydro/HydroMain/Spark/NonTelescoping nontelescoping=True +weaklib
+thornado -maxblocks=64 nE=16 swE=1 nSpecies=6 nNodes=2 nMoments=4 momentClosure=MINERBO thornadoOrder=ORDER_V Bittree=True<u></u><u></u></p>
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<p class="MsoNormal"><u></u> <u></u></p>
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<p class="MsoNormal">. After successful setup and compilation then tried to run it but face the following error:<u></u><u></u></p>
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<p class="MsoNormal">HDF5-DIAG: Error detected in HDF5 (1.14.3) MPI-process 0:<br>
#000: /home/taghinia/FLASH/HDF5/hdf5-1.14.3/src/H5F.c line 660 in H5Fcreate(): unable to synchronously create file<br>
major: File accessibility<br>
minor: Unable to create file<br>
#001: /home/taghinia/FLASH/HDF5/hdf5-1.14.3/src/H5F.c line 614 in H5F__create_api_common(): unable to create file<br>
major: File accessibility<br>
minor: Unable to open file<br>
#002: /home/taghinia/FLASH/HDF5/hdf5-1.14.3/src/H5VLcallback.c line 3605 in H5VL_file_create(): file create failed<br>
major: Virtual Object Layer<br>
minor: Unable to create file<br>
#003: /home/taghinia/FLASH/HDF5/hdf5-1.14.3/src/H5VLcallback.c line 3571 in H5VL__file_create(): file create failed<br>
major: Virtual Object Layer<br>
minor: Unable to create file<br>
#004: /home/taghinia/FLASH/HDF5/hdf5-1.14.3/src/H5VLnative_file.c line 94 in H5VL__native_file_create(): unable to create file<br>
major: File accessibility<br>
minor: Unable to open file<br>
#005: /home/taghinia/FLASH/HDF5/hdf5-1.14.3/src/H5Fint.c line 1851 in H5F_open(): unable to open file: name = 'chk/delep_hdf5_chk_0000', tent_flags = 13<br>
major: File accessibility<br>
minor: Unable to open file<br>
#006: /home/taghinia/FLASH/HDF5/hdf5-1.14.3/src/H5FD.c line 769 in H5FD_open(): open failed<br>
major: Virtual File Layer<br>
minor: Unable to initialize object<br>
#007: /home/taghinia/FLASH/HDF5/hdf5-1.14.3/src/H5FDsec2.c line 323 in H5FD__sec2_open(): unable to open file: name = 'chk/delep_hdf5_chk_0000', errno = 2, error message = 'No such file or directory', flags = 13, o_flags = 242<br>
major: File accessibility<br>
minor: Unable to open file<br>
Error: unable to initialize file<u></u><u></u></p>
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<p class="MsoNormal">Can anyone help me with that? Is that something due to netcdf and HDF5 locking? I also tried <span class="m_-4952873475370920071gmail-hljs-keyword"><span style="font-family:Menlo;color:rgb(48,48,48);background:rgb(248,248,248)">export</span></span><span style="font-family:Menlo;color:rgb(48,48,48);background:rgb(248,248,248)">
HDF5_USE_FILE_LOCKING=<span class="m_-4952873475370920071gmail-hljs-literal">FALSE </span></span><span class="m_-4952873475370920071gmail-hljs-literal"><span style="font-family:Arial,sans-serif;color:rgb(48,48,48);background:rgb(248,248,248)">but it did not help.</span></span><span style="color:rgb(48,48,48);background:rgb(248,248,248)"><br>
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</span><span class="m_-4952873475370920071gmail-hljs-literal"><span style="font-family:Arial,sans-serif;color:rgb(48,48,48);background:rgb(248,248,248)">Best,</span></span><span style="font-family:Arial,sans-serif;color:rgb(48,48,48);background:rgb(248,248,248)"><br>
<span class="m_-4952873475370920071gmail-hljs-literal">Kiya</span></span><u></u><u></u></p>
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<p class="MsoNormal"><span style="font-family:Menlo;color:rgb(48,48,48);background:rgb(248,248,248)"><br>
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