<head><!-- BaNnErBlUrFlE-HeAdEr-start -->
<style>
#pfptBanner0sohcy4 { all: revert !important; display: block !important;
visibility: visible !important; opacity: 1 !important;
background-color: #D0D8DC !important;
max-width: none !important; max-height: none !important }
.pfptPrimaryButton0sohcy4:hover, .pfptPrimaryButton0sohcy4:focus {
background-color: #b4c1c7 !important; }
.pfptPrimaryButton0sohcy4:active {
background-color: #90a4ae !important; }
</style>
<!-- BaNnErBlUrFlE-HeAdEr-end -->
</head><!-- BaNnErBlUrFlE-BoDy-start -->
<!-- Preheader Text : BEGIN -->
<div style="display:none !important;display:none;visibility:hidden;mso-hide:all;font-size:1px;color:#ffffff;line-height:1px;height:0px;max-height:0px;opacity:0;overflow:hidden;">
Yes, getting Thornado working is a good idea, my question was about that link, I had just emailed the "ask for help" email listed at the bottom and got my email returned saying my message was blocked, so I am unsure of how to proceed</div>
<!-- Preheader Text : END -->
<!-- Email Banner : BEGIN -->
<div style="display:none !important;display:none;visibility:hidden;mso-hide:all;font-size:1px;color:#ffffff;line-height:1px;height:0px;max-height:0px;opacity:0;overflow:hidden;">ZjQcmQRYFpfptBannerStart</div>
<!--[if ((ie)|(mso))]>
<table border="0" cellspacing="0" cellpadding="0" width="100%" style="padding: 16px 0px 16px 0px; direction: ltr" ><tr><td>
<table border="0" cellspacing="0" cellpadding="0" style="padding: 0px 10px 5px 6px; width: 100%; border-radius:4px; border-top:4px solid #90a4ae;background-color:#D0D8DC;"><tr><td valign="top">
<table align="left" border="0" cellspacing="0" cellpadding="0" style="padding: 4px 8px 4px 8px">
<tr><td style="color:#000000; font-family: 'Arial', sans-serif; font-weight:bold; font-size:14px; direction: ltr">
This Message Is From an External Sender
</td></tr>
<tr><td style="color:#000000; font-weight:normal; font-family: 'Arial', sans-serif; font-size:12px; direction: ltr">
This message came from outside your organization.
</td></tr>
</table>
</td></tr></table>
</td></tr></table>
<![endif]-->
<![if !((ie)|(mso))]>
<div dir="ltr" id="pfptBanner0sohcy4" style="all: revert !important; display:block !important; text-align: left !important; margin:16px 0px 16px 0px !important; padding:8px 16px 8px 16px !important; border-radius: 4px !important; min-width: 200px !important; background-color: #D0D8DC !important; background-color: #D0D8DC; border-top: 4px solid #90a4ae !important; border-top: 4px solid #90a4ae;">
<div id="pfptBanner0sohcy4" style="all: unset !important; float:left !important; display:block !important; margin: 0px 0px 1px 0px !important; max-width: 600px !important;">
<div id="pfptBanner0sohcy4" style="all: unset !important; display:block !important; visibility: visible !important; background-color: #D0D8DC !important; color:#000000 !important; color:#000000; font-family: 'Arial', sans-serif !important; font-family: 'Arial', sans-serif; font-weight:bold !important; font-weight:bold; font-size:14px !important; line-height:18px !important; line-height:18px">
This Message Is From an External Sender
</div>
<div id="pfptBanner0sohcy4" style="all: unset !important; display:block !important; visibility: visible !important; background-color: #D0D8DC !important; color:#000000 !important; color:#000000; font-weight:normal; font-family: 'Arial', sans-serif !important; font-family: 'Arial', sans-serif; font-size:12px !important; line-height:18px !important; line-height:18px; margin-top:2px !important;">
This message came from outside your organization.
</div>
</div>
<div style="clear: both !important; display: block !important; visibility: hidden !important; line-height: 0 !important; font-size: 0.01px !important; height: 0px"> </div>
</div>
<![endif]>
<div style="display:none !important;display:none;visibility:hidden;mso-hide:all;font-size:1px;color:#ffffff;line-height:1px;height:0px;max-height:0px;opacity:0;overflow:hidden;">ZjQcmQRYFpfptBannerEnd</div>
<!-- Email Banner : END -->
<!-- BaNnErBlUrFlE-BoDy-end -->
<div dir="ltr"><div class="gmail_default" style="font-family:monospace;font-size:large">Yes, getting Thornado working is a good idea, my question was about that link, I had just emailed the "ask for help" email listed at the bottom and got my email returned saying my message was blocked, so I am unsure of how to proceed with getting help on that front (or really Thornado in general).<br></div></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Tue, Sep 3, 2024 at 12:50 PM Dubey, Anshu <<a href="mailto:adubey@anl.gov">adubey@anl.gov</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div class="msg8182954874377207856">
<div lang="EN-US" style="overflow-wrap: break-word;">
<div class="m_8182954874377207856WordSection1">
<p class="MsoNormal"><span style="font-size:12pt">Dear Peter,<u></u><u></u></span></p>
<p class="MsoNormal"><span style="font-size:12pt">Thornado is an imported module into Flash-X. It has its own developers and repository. So yes, making sure that you can get Thornado to work would be a good way to go.<u></u><u></u></span></p>
<p class="MsoNormal"><span style="font-size:12pt">Best,<u></u><u></u></span></p>
<p class="MsoNormal"><span style="font-size:12pt">Anshu<u></u><u></u></span></p>
<p class="MsoNormal"><span style="font-size:12pt"><u></u> <u></u></span></p>
<div id="m_8182954874377207856mail-editor-reference-message-container">
<div>
<div>
<div style="border-width:1pt medium medium;border-style:solid none none;border-color:rgb(181,196,223) currentcolor currentcolor;padding:3pt 0in 0in">
<p class="MsoNormal" style="margin-bottom:12pt"><b><span style="font-size:12pt;color:black">From:
</span></b><span style="font-size:12pt;color:black">Flash-X-users <<a href="mailto:flash-x-users-bounces@lists.cels.anl.gov" target="_blank">flash-x-users-bounces@lists.cels.anl.gov</a>> on behalf of Peter Manzella <<a href="mailto:peter.manzella@maine.edu" target="_blank">peter.manzella@maine.edu</a>><br>
<b>Date: </b>Tuesday, September 3, 2024 at 11:24</span><span style="font-size:12pt;font-family:"Arial",sans-serif;color:black"> </span><span style="font-size:12pt;color:black">AM<br>
<b>To: </b>kiyarash Taghiniyarami <<a href="mailto:kiyarash.niyarami@gmail.com" target="_blank">kiyarash.niyarami@gmail.com</a>><br>
<b>Cc: </b><a href="mailto:flash-x-users@lists.cels.anl.gov" target="_blank">flash-x-users@lists.cels.anl.gov</a> <<a href="mailto:flash-x-users@lists.cels.anl.gov" target="_blank">flash-x-users@lists.cels.anl.gov</a>><br>
<b>Subject: </b>Re: [Flash-X-users] Getting Flash-X to work<u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:1pt;color:white">Hi, So, thornado has been my issue, I did some digging and found this link (https:</span><span style="font-size:1pt;font-family:"Arial",sans-serif;color:white"> </span><span style="font-size:1pt;color:white">//github.</span><span style="font-size:1pt;font-family:"Arial",sans-serif;color:white"> </span><span style="font-size:1pt;color:white">com/ranchu1/HowTo-FlashX-Thornado/tree/master)
and just found this link and have started to follow the tests it lists, very helpful to take it a little<u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:1pt;color:white">ZjQcmQRYFpfptBannerStart<u></u><u></u></span></p>
</div>
<div style="border-width:medium;border-style:none;border-color:rgb(144,164,174) currentcolor currentcolor;display:block;text-align:left;margin:0px;padding:16px;border-radius:4px;min-width:200px;background-color:rgb(208,216,220)" id="m_8182954874377207856pfptBannerhualeqy">
<div id="m_8182954874377207856pfptBannerhualeqy">
<div id="m_8182954874377207856pfptBannerhualeqy">
<p class="MsoNormal" style="line-height:13.5pt;background:rgb(208,216,220)"><b><span style="font-size:12pt;font-family:"Arial",sans-serif;color:black">This Message Is From an External Sender
<u></u><u></u></span></b></p>
</div>
<div id="m_8182954874377207856pfptBannerhualeqy">
<p class="MsoNormal" style="line-height:13.5pt;background:rgb(208,216,220)"><span style="font-size:12pt;font-family:"Arial",sans-serif;color:black">This message came from outside your organization.
<u></u><u></u></span></p>
</div>
</div>
<div>
<p class="MsoNormal" style="background:rgb(208,216,220)"><span style="font-size:12pt;color:black"> </span><span style="font-size:12pt"><u></u><u></u></span></p>
</div>
</div>
<div>
<p class="MsoNormal"><span style="font-size:1pt;color:white">ZjQcmQRYFpfptBannerEnd<u></u><u></u></span></p>
</div>
<div>
<div>
<p class="MsoNormal"><span style="font-size:18pt;font-family:"Courier New"">Hi,<u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:18pt;font-family:"Courier New"">So, thornado has been my issue, I did some digging and found this link (<a href="https://urldefense.us/v3/__https:/github.com/ranchu1/HowTo-FlashX-Thornado/tree/master__;!!G_uCfscf7eWS!bBZBV3a8yrv2pVog4R4uZuLcufNptkroqa7xjPAm232Kl2Wp8JCdKEjfjMWJFui04WlxbPgmTRFDD5EXZFsRIf07uLSupqSoCX6ZRiRQ$" target="_blank">https://github.com/ranchu1/HowTo-FlashX-Thornado/tree/master</a>)
and just found this link and have started to follow the tests it lists, very helpful to take it a little slower and retrace some steps. I've gotten through the setup successfully, but run into errors with 'make' I'm hoping that by taking it a little slower
it will get me on track a little easier and faster. Does this seems like a good route to go?<u></u><u></u></span></p>
</div>
</div>
<p class="MsoNormal"><span style="font-size:12pt"><u></u> <u></u></span></p>
<div>
<div>
<p class="MsoNormal"><span style="font-size:12pt">On Fri, Aug 30, 2024 at 2:50</span><span style="font-size:12pt;font-family:"Arial",sans-serif"> </span><span style="font-size:12pt">AM kiyarash Taghiniyarami <<a href="mailto:kiyarash.niyarami@gmail.com" target="_blank">kiyarash.niyarami@gmail.com</a>>
wrote:<u></u><u></u></span></p>
</div>
<blockquote style="border-width:medium medium medium 1pt;border-style:none none none solid;border-color:currentcolor currentcolor currentcolor rgb(204,204,204);padding:0in 0in 0in 6pt;margin-left:4.8pt;margin-right:0in">
<div>
<p class="MsoNormal"><span style="font-size:12pt">Dear Ryan & Peter,<br>
<br>
I share my Relaxation setup, lists of files and the Config with you if you want to compare. Just to correct myself: wl files of weaklib do not need to be present in the lists of files, because the Thornado calls them privately when FlashX calls the Thornado.<br>
In the Config make sure the lines 9to11 are set properly due to your own paths.<br>
Best ,<br>
Kiya<u></u><u></u></span></p>
</div>
<p class="MsoNormal"><span style="font-size:12pt"><u></u> <u></u></span></p>
<div>
<div>
<p class="MsoNormal"><span style="font-size:12pt">On Thu, Aug 29, 2024 at 4:23</span><span style="font-size:12pt;font-family:"Arial",sans-serif"> </span><span style="font-size:12pt">PM Peter Manzella <<a href="mailto:peter.manzella@maine.edu" target="_blank">peter.manzella@maine.edu</a>>
wrote:<u></u><u></u></span></p>
</div>
<blockquote style="border-width:medium medium medium 1pt;border-style:none none none solid;border-color:currentcolor currentcolor currentcolor rgb(204,204,204);padding:0in 0in 0in 6pt;margin-left:4.8pt;margin-right:0in">
<div>
<div>
<p class="MsoNormal"><span style="font-size:18pt;font-family:"Courier New"">Ryan,<u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:18pt;font-family:"Courier New""><u></u> <u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:18pt;font-family:"Courier New"">Depending on how this troubleshooting goes, will decide whether I decide to do a fresh (re)start, I want to give it a chance before I go that route. As for Kiya's suggestions, I have
been working on them, I tried changing "thornadoOrder=ORDER_1" to "thornadoOrder=ORDER_V" and along with that I have looked in the object directory, and grabbed that output and placed it in the file as Kiya, and you have suggested, see attached.<u></u><u></u></span></p>
</div>
</div>
<p class="MsoNormal"><span style="font-size:12pt"><u></u> <u></u></span></p>
<div>
<div>
<p class="MsoNormal"><span style="font-size:12pt">On Thu, Aug 29, 2024 at 12:08</span><span style="font-size:12pt;font-family:"Arial",sans-serif"> </span><span style="font-size:12pt">AM Ryan Farber <<a href="mailto:rjfarber@umich.edu" target="_blank">rjfarber@umich.edu</a>>
wrote:<u></u><u></u></span></p>
</div>
<blockquote style="border-width:medium medium medium 1pt;border-style:none none none solid;border-color:currentcolor currentcolor currentcolor rgb(204,204,204);padding:0in 0in 0in 6pt;margin-left:4.8pt;margin-right:0in">
<div>
<p class="MsoNormal"><span style="font-size:12pt">Hi Peter,<u></u><u></u></span></p>
<div>
<p class="MsoNormal"><span style="font-size:12pt"><u></u> <u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:12pt">1. Less of a Flash-X suggestion as much as personal life philosophy: yes sometimes the best path forward is a fresh (re)start. Along that vein, I've started the process of typing up a list of steps I need(ed)
to take to "Get Flash-X to work" on my ubuntu virtual private server (which is definitely more of a pain since no packages are provided for me, but on the plus side I have full control over everything). I'm currently building lapack. (Will finish after I go
to sleep likely.)<br>
<br>
2. I don't know that you have to start over. Kiya mentioned two potentially helpful suggestions<u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:12pt"><br>
i. Try changing " </span><span style="font-size:18pt;font-family:"Courier New"">thornadoOrder=ORDER_1"
</span><span style="font-size:12pt;font-family:"Arial",sans-serif">in your setup line to a different value<br>
</span><span style="font-size:12pt">ii. In your object directory, type "ls -l *.F90 > Flash-X-files.txt" and share that file with us. Then we can see if you the setup line correctly placed the files you need in the object directory, or if some are missing.<u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:12pt"><u></u> <u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:12pt">Best wishes,<br clear="all">
<u></u><u></u></span></p>
<div>
<div>
<div>
<div>
<div>
<div>
<p class="MsoNormal"><span style="font-size:12pt">--------<u></u><u></u></span></p>
<div>
<p class="MsoNormal"><span style="font-size:12pt">Ryan<u></u><u></u></span></p>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
<p class="MsoNormal"><span style="font-size:12pt"><u></u> <u></u></span></p>
</div>
</div>
<p class="MsoNormal"><span style="font-size:12pt"><u></u> <u></u></span></p>
<div>
<div>
<p class="MsoNormal"><span style="font-size:12pt">On Wed, Aug 28, 2024 at 8:28</span><span style="font-size:12pt;font-family:"Arial",sans-serif"> </span><span style="font-size:12pt">AM Peter Manzella <<a href="mailto:peter.manzella@maine.edu" target="_blank">peter.manzella@maine.edu</a>>
wrote:<u></u><u></u></span></p>
</div>
<blockquote style="border-width:medium medium medium 1pt;border-style:none none none solid;border-color:currentcolor currentcolor currentcolor rgb(204,204,204);padding:0in 0in 0in 6pt;margin-left:4.8pt;margin-right:0in">
<div>
<div>
<p class="MsoNormal"><span style="font-size:18pt;font-family:"Courier New"">Kiya & Ryan,<u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:18pt;font-family:"Courier New""><u></u> <u></u></span></p>
</div>
<div>
<p class="MsoNormal" style="margin-bottom:0.25in"><span style="font-size:18pt;font-family:"Courier New"">I finally got the chance to take a look at this, and what I'm gathering is that my installation of thornado is not correct. I am not sure how to troubleshoot
this beyond "uninstall and reinstall" which I can assume is not the way to go about this. Ryan mentioned that it may not be in the proper system PATH, I'm assuming this could be corrected in the makefile that is in the "sites" directory?
<u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:18pt;font-family:"Courier New"">I do hope that my struggles prove to be useful and helpful for those in the future, so I very much thank you all for your help.<u></u><u></u></span></p>
</div>
</div>
<p class="MsoNormal"><span style="font-size:12pt"><u></u> <u></u></span></p>
<div>
<div>
<p class="MsoNormal"><span style="font-size:12pt">On Tue, Aug 27, 2024 at 12:42</span><span style="font-size:12pt;font-family:"Arial",sans-serif"> </span><span style="font-size:12pt">AM kiyarash Taghiniyarami <<a href="mailto:kiyarash.niyarami@gmail.com" target="_blank">kiyarash.niyarami@gmail.com</a>>
wrote:<u></u><u></u></span></p>
</div>
<blockquote style="border-width:medium medium medium 1pt;border-style:none none none solid;border-color:currentcolor currentcolor currentcolor rgb(204,204,204);padding:0in 0in 0in 6pt;margin-left:4.8pt;margin-right:0in">
<div>
<p class="MsoNormal"><span style="font-size:12pt">Dear Peter & Ryan,<br>
No problem. I am just trying to help and hope it will be useful.<br>
<br>
I see in your setup syntax Thornado order is set to 1. Order one is not working properly (some files are missing in thornado order1 directory) since I asked Austin so far, he mentioned they tried to use orderV and then in flash.par setting v = 0.0 gives the
same result as order1. So I am afraid Peter your setup is not complete yet and because of that <span style="color:rgb(80,0,80)">wlEOSInversionModule.F90 </span><span style="color:black">is missing in the directory created by setup</span>, check that out again.<br>
<br>
If you get ls of the obj directory (or whatever created by setup) you could see list of codes linked there and check if wlEOSInversion in present there or not.<br>
<br>
Best,<br>
Kiya<u></u><u></u></span></p>
</div>
<p class="MsoNormal"><span style="font-size:12pt"><u></u> <u></u></span></p>
<div>
<div>
<p class="MsoNormal"><span style="font-size:12pt">On Tue, Aug 27, 2024 at 6:31</span><span style="font-size:12pt;font-family:"Arial",sans-serif"> </span><span style="font-size:12pt">AM Peter Manzella <<a href="mailto:peter.manzella@maine.edu" target="_blank">peter.manzella@maine.edu</a>>
wrote:<u></u><u></u></span></p>
</div>
<blockquote style="border-width:medium medium medium 1pt;border-style:none none none solid;border-color:currentcolor currentcolor currentcolor rgb(204,204,204);padding:0in 0in 0in 6pt;margin-left:4.8pt;margin-right:0in">
<div>
<div>
<p class="MsoNormal"><span style="font-size:1pt;color:white">Ryan, Of course, many many thanks to Kiya, been extremely helpful. And many thanks to you for lending a helping hand too! I didn't see your email till very much
after I had left my office, but noticed it and had to come in to take care of<u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:1pt;color:white">ZjQcmQRYFpfptBannerStart<u></u><u></u></span></p>
</div>
<div style="border-width:3pt medium medium;border-style:solid none none;border-color:rgb(144,164,174) currentcolor currentcolor;padding:6pt 0in 0in;margin-top:12pt;margin-bottom:12pt;border-radius:4px;min-width:200px" id="m_8182954874377207856m_2908017283711212527m_4975573316024284248m_-7129167587754468915m_-7203840056991714427m_-7840863479906086397m_6935191448633833647m_8021023105190335669pfptBanner2j8lrmj">
<div style="margin-bottom:0.75pt;float:left" id="m_8182954874377207856m_2908017283711212527m_4975573316024284248m_-7129167587754468915m_-7203840056991714427m_-7840863479906086397m_6935191448633833647m_8021023105190335669pfptBanner2j8lrmj">
<div id="m_8182954874377207856m_2908017283711212527m_4975573316024284248m_-7129167587754468915m_-7203840056991714427m_-7840863479906086397m_6935191448633833647m_8021023105190335669pfptBanner2j8lrmj">
<p class="MsoNormal" style="line-height:13.5pt;background:rgb(208,216,220)"><b><span style="font-size:10.5pt;font-family:"Arial",sans-serif;color:black">This Message Is From an External Sender
<u></u><u></u></span></b></p>
</div>
<div style="margin-top:1.5pt" id="m_8182954874377207856m_2908017283711212527m_4975573316024284248m_-7129167587754468915m_-7203840056991714427m_-7840863479906086397m_6935191448633833647m_8021023105190335669pfptBanner2j8lrmj">
<p class="MsoNormal" style="line-height:13.5pt;background:rgb(208,216,220)"><span style="font-size:9pt;font-family:"Arial",sans-serif;color:black">This message came from outside your organization.
<u></u><u></u></span></p>
</div>
</div>
<div>
<p class="MsoNormal" style="line-height:0%;background:rgb(208,216,220)"><span style="font-size:1pt;color:black"> </span><span style="font-size:1pt"><u></u><u></u></span></p>
</div>
</div>
<div>
<p class="MsoNormal"><span style="font-size:1pt;color:white">ZjQcmQRYFpfptBannerEnd<u></u><u></u></span></p>
</div>
<div>
<div>
<p class="MsoNormal"><span style="font-size:18pt;font-family:"Courier New"">Ryan,<u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:18pt;font-family:"Courier New"">Of course, many many thanks to Kiya, been extremely helpful. And many thanks to you for lending a helping hand too! I didn't see your email till very much after I had left my office,
but noticed it and had to come in to take care of some other things, so it is a bit late, sorry.<u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:18pt;font-family:"Courier New"">As asked (let me know if I didn't grab the right thing)<u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:18pt;font-family:"Courier New"">1) screenshot of 'ls' in the problem directory:<br>
<img border="0" width="471" height="27" style="width: 4.9062in; height: 0.2812in;" id="m_8182954874377207856_x0000_i1025" src="cid:ii_191b8e81a89cb971f161"><u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:18pt;font-family:"Courier New"">2) my setup command: <u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:18pt;font-family:"Courier New""><u></u> <u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:18pt;font-family:"Courier New"">./setup Relaxation -auto -3d +cartesian +cube16 +thornado nE=16 swE=0 nSpecies=6 nNodes=2 nMoments=4 momentClosure=MINERBO thornadoOrder=ORDER_1 +weaklib -parfile=flash.par<u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:18pt;font-family:"Courier New""><u></u> <u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:18pt;font-family:"Courier New"">3)full output in a compile.txt<u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:18pt;font-family:"Courier New""><u></u> <u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:18pt;font-family:"Courier New"">I really appreciate any and all help I can get, I've spent a bit on trying to get through it, but quite often it felt like I was going in circles.<u></u><u></u></span></p>
</div>
</div>
<p class="MsoNormal"><span style="font-size:12pt"><u></u> <u></u></span></p>
<div>
<div>
<p class="MsoNormal"><span style="font-size:12pt">On Mon, Aug 26, 2024 at 4:42</span><span style="font-size:12pt;font-family:"Arial",sans-serif"> </span><span style="font-size:12pt">PM Ryan Farber <<a href="mailto:rjfarber@umich.edu" target="_blank">rjfarber@umich.edu</a>>
wrote:<u></u><u></u></span></p>
</div>
<blockquote style="border-width:medium medium medium 1pt;border-style:none none none solid;border-color:currentcolor currentcolor currentcolor rgb(204,204,204);padding:0in 0in 0in 6pt;margin-left:4.8pt;margin-right:0in">
<div>
<p class="MsoNormal"><span style="font-size:12pt">Hi Peter,<u></u><u></u></span></p>
<div>
<p class="MsoNormal"><span style="font-size:12pt"><u></u> <u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:12pt">If you share the following I can take a look tonight:<u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:12pt">1) screenshot of “ls” in your problem directory<u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:12pt">2) your setup command<u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:12pt">3) the full output and error streams of your compilation command (e.g.,
</span><span style="font-size:12pt;font-family:"American Typewriter",serif">make 2>&1 compile.txt</span><span style="font-size:12pt"><u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:12pt"><u></u> <u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:12pt">As an aside, thanks to Kiya for your kind contributions to this thread! I’m sure what you've provided will be useful in the future too!<u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:12pt"><u></u> <u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:12pt">Best wishes,<u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:12pt">Ryan<u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:12pt"><u></u> <u></u></span></p>
<div>
<p class="MsoNormal"><span style="font-size:12pt">Sent from my iPhone<u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:12pt"><br>
<br>
<u></u><u></u></span></p>
<blockquote style="margin-top:5pt;margin-bottom:5pt">
<p class="MsoNormal" style="margin-bottom:12pt"><span style="font-size:12pt">On Aug 26, 2024, at 1:53 PM, Peter Manzella <<a href="mailto:peter.manzella@maine.edu" target="_blank">peter.manzella@maine.edu</a>> wrote:<u></u><u></u></span></p>
</blockquote>
</div>
<blockquote style="margin-top:5pt;margin-bottom:5pt">
<div>
<p class="MsoNormal"><span style="font-size:12pt;font-family:"Calibri",sans-serif"></span><span style="font-size:12pt">
<u></u><u></u></span></p>
<div>
<p class="MsoNormal"><span style="font-size:1pt;color:white">OK, that makes more sense, I'll need to make sure those are in the file, not command line. I went to setup after adding those, and have this error, its related
to equation of state, and I haven't been able to find anything in documentation<u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:1pt;color:white">ZjQcmQRYFpfptBannerStart<u></u><u></u></span></p>
</div>
<div style="border-width:3pt medium medium;border-style:solid none none;border-color:rgb(144,164,174) currentcolor currentcolor;padding:6pt 0in 0in;margin-top:12pt;margin-bottom:12pt;border-radius:4px;min-width:200px" id="m_8182954874377207856m_2908017283711212527m_4975573316024284248m_-7129167587754468915m_-7203840056991714427m_-7840863479906086397m_6935191448633833647m_8021023105190335669m_6326188682066270762pfptBanneruofycud">
<div style="margin-bottom:0.75pt;float:left" id="m_8182954874377207856m_2908017283711212527m_4975573316024284248m_-7129167587754468915m_-7203840056991714427m_-7840863479906086397m_6935191448633833647m_8021023105190335669m_6326188682066270762pfptBanneruofycud">
<div id="m_8182954874377207856m_2908017283711212527m_4975573316024284248m_-7129167587754468915m_-7203840056991714427m_-7840863479906086397m_6935191448633833647m_8021023105190335669m_6326188682066270762pfptBanneruofycud">
<p class="MsoNormal" style="line-height:13.5pt;background:rgb(208,216,220)"><b><span style="font-size:10.5pt;font-family:"Arial",sans-serif;color:black">This Message Is From an External Sender
<u></u><u></u></span></b></p>
</div>
<div style="margin-top:1.5pt" id="m_8182954874377207856m_2908017283711212527m_4975573316024284248m_-7129167587754468915m_-7203840056991714427m_-7840863479906086397m_6935191448633833647m_8021023105190335669m_6326188682066270762pfptBanneruofycud">
<p class="MsoNormal" style="line-height:13.5pt;background:rgb(208,216,220)"><span style="font-size:9pt;font-family:"Arial",sans-serif;color:black">This message came from outside your organization.
<u></u><u></u></span></p>
</div>
</div>
<div>
<p class="MsoNormal" style="line-height:0%;background:rgb(208,216,220)"><span style="font-size:1pt;color:black"> </span><span style="font-size:1pt"><u></u><u></u></span></p>
</div>
</div>
<div>
<p class="MsoNormal"><span style="font-size:1pt;color:white">ZjQcmQRYFpfptBannerEnd<u></u><u></u></span></p>
</div>
<div>
<div>
<p class="MsoNormal"><span style="font-size:18pt;font-family:"Courier New"">OK, that makes more sense, I'll need to make sure those are in the file, not command line. I went to setup after adding those, and have this error, its related to equation of state,
and I haven't been able to find anything in documentation about it. <u></u><u></u></span></p>
</div>
<div>
<div>
<p class="MsoNormal"><span style="font-size:18pt;font-family:"Courier New""><image.png><u></u><u></u></span></p>
</div>
<p class="MsoNormal"><span style="font-size:18pt;font-family:"Courier New""><u></u> <u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:18pt;font-family:"Courier New"">This is the sort of thing that is frustrating, not being able to find where I need to look to troubleshoot. I tried using grep to find it, I've looked in the documentation link you
sent me (I already knew about that, but it wasn't helpful beyond the quick start), but couldn't find it. Is this more of a thornado issue? Cause like I said I'm not super acquainted with large codes that require so many moving pieces.<u></u><u></u></span></p>
</div>
</div>
<p class="MsoNormal"><span style="font-size:12pt"><u></u> <u></u></span></p>
<div>
<div>
<p class="MsoNormal"><span style="font-size:12pt">On Mon, Aug 26, 2024 at 2:28</span><span style="font-size:12pt;font-family:"Arial",sans-serif"> </span><span style="font-size:12pt">PM kiyarash Taghiniyarami <<a href="mailto:kiyarash.niyarami@gmail.com" target="_blank">kiyarash.niyarami@gmail.com</a>>
wrote:<u></u><u></u></span></p>
</div>
<blockquote style="border-width:medium medium medium 1pt;border-style:none none none solid;border-color:currentcolor currentcolor currentcolor rgb(204,204,204);padding:0in 0in 0in 6pt;margin-left:4.8pt;margin-right:0in">
<div>
<p class="MsoNormal" style="margin-bottom:12pt"><span style="font-size:12pt">Dear Peter,<br>
These are not for command line (If you mean "command line" as setup for configuring a new run).<br>
Before setup you need to make a directory in the Simulation unit (/source/Simulation/SimulationMain). In that directory you need some codes such as Simulation_data.F90, Simulation_init.F90, Simulation_initBlock.F90, and etc.<br>
Say you need the "Half" variable in the Simulation_initBlock.F90. you can call it by KindModule from Thornado if you write the following in that fortran code:<br>
Use KindModule, only: Half<br>
so you can use the "Half" anywhere in that Simulation_initBlock.F90. It has nothing to do with typing in the command line and hitting enter.<br>
If I understand correctly what you mean, there are some setup variables you can type in the command line (such as nxb,nyb, swE,nE and etc.) which are different from modules. setup variables can be set up in Config files in any physics subdirectories.<br>
<br>
There is documentation for Flashx as well: <a href="https://urldefense.us/v3/__https:/flash-x.github.io/Flash-X-docs/*__;Iw!!G_uCfscf7eWS!cy5tKVb9Qwu2rLLCi1LNfkq2D5uVYlmB4FWF6x2Pvqvq1OrrRPvzAwx-yFHLivQcBbWQTRySdjTQzVXdJjzC_Qh1vl2zpGdoLrGAwyOT$" target="_blank">https://flash-x.github.io/Flash-X-docs/#</a><br>
<br>
Kind regards,<br>
Kiya<u></u><u></u></span></p>
</div>
</blockquote>
</div>
<p class="MsoNormal"><span style="font-size:12pt"><br clear="all">
<br>
<span class="m_8182954874377207856gmailsignatureprefix">-- </span><u></u><u></u></span></p>
<div>
<div>
<div>
<p class="MsoNormal"><span style="font-size:12pt">Peter Manzella<u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:12pt">PhD Candidate, Department of Physics and Astronomy<u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:12pt">309 Bennett Hall<u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:12pt">University of Maine<u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:12pt"><a href="mailto:peter.manzella@maine.edu" target="_blank">peter.manzella@maine.edu</a><u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:12pt"><u></u> <u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:12pt;font-family:"Arial",sans-serif">“If you run out of ideas follow the road; you'll get there.” – Edgar Allan Poe</span><span style="font-size:12pt"><u></u><u></u></span></p>
</div>
</div>
</div>
<p class="MsoNormal"><span style="font-size:12pt">-- <br>
Flash-X-users mailing list<br>
<a href="mailto:Flash-X-users@lists.cels.anl.gov" target="_blank">Flash-X-users@lists.cels.anl.gov</a><br>
<a href="https://urldefense.us/v3/__https:/lists.cels.anl.gov/mailman/listinfo/flash-x-users__;!!G_uCfscf7eWS!Z1_GXydE2pV62oyGpM2ZteP_zTQdp-c9MRnUEZgvDy2eM0cBnqD656HBLPAkAMqZu7096jmjWOZzHL2ARHhx_LB-ZMcFtJGRTFtRFBtj$" target="_blank">https://lists.cels.anl.gov/mailman/listinfo/flash-x-users</a><u></u><u></u></span></p>
</div>
</blockquote>
</div>
</div>
</blockquote>
</div>
<p class="MsoNormal"><span style="font-size:12pt"><br clear="all">
<br>
<span class="m_8182954874377207856gmailsignatureprefix">-- </span><u></u><u></u></span></p>
<div>
<div>
<div>
<p class="MsoNormal"><span style="font-size:12pt">Peter Manzella<u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:12pt">PhD Candidate, Department of Physics and Astronomy<u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:12pt">309 Bennett Hall<u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:12pt">University of Maine<u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:12pt"><a href="mailto:peter.manzella@maine.edu" target="_blank">peter.manzella@maine.edu</a><u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:12pt"><u></u> <u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:12pt;font-family:"Arial",sans-serif">“If you run out of ideas follow the road; you'll get there.” – Edgar Allan Poe</span><span style="font-size:12pt"><u></u><u></u></span></p>
</div>
</div>
</div>
<p class="MsoNormal"><span style="font-size:12pt">-- <br>
Flash-X-users mailing list<br>
<a href="mailto:Flash-X-users@lists.cels.anl.gov" target="_blank">Flash-X-users@lists.cels.anl.gov</a><br>
<a href="https://urldefense.us/v3/__https:/lists.cels.anl.gov/mailman/listinfo/flash-x-users__;!!G_uCfscf7eWS!bBZBV3a8yrv2pVog4R4uZuLcufNptkroqa7xjPAm232Kl2Wp8JCdKEjfjMWJFui04WlxbPgmTRFDD5EXZFsRIf07uLSupqSoCSDo5WHR$" target="_blank">https://lists.cels.anl.gov/mailman/listinfo/flash-x-users</a><u></u><u></u></span></p>
</div>
</blockquote>
</div>
</blockquote>
</div>
<p class="MsoNormal"><span style="font-size:12pt"><br clear="all">
<br>
<span class="m_8182954874377207856gmailsignatureprefix">-- </span><u></u><u></u></span></p>
<div>
<div>
<div>
<p class="MsoNormal"><span style="font-size:12pt">Peter Manzella<u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:12pt">PhD Candidate, Department of Physics and Astronomy<u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:12pt">309 Bennett Hall<u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:12pt">University of Maine<u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:12pt"><a href="mailto:peter.manzella@maine.edu" target="_blank">peter.manzella@maine.edu</a><u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:12pt"><u></u> <u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:12pt;font-family:"Arial",sans-serif">“If you run out of ideas follow the road; you'll get there.” – Edgar Allan Poe</span><span style="font-size:12pt"><u></u><u></u></span></p>
</div>
</div>
</div>
</blockquote>
</div>
</blockquote>
</div>
<p class="MsoNormal"><span style="font-size:12pt"><br clear="all">
<br>
<span class="m_8182954874377207856gmailsignatureprefix">-- </span><u></u><u></u></span></p>
<div>
<div>
<div>
<p class="MsoNormal"><span style="font-size:12pt">Peter Manzella<u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:12pt">PhD Candidate, Department of Physics and Astronomy<u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:12pt">309 Bennett Hall<u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:12pt">University of Maine<u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:12pt"><a href="mailto:peter.manzella@maine.edu" target="_blank">peter.manzella@maine.edu</a><u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:12pt"><u></u> <u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:12pt;font-family:"Arial",sans-serif">“If you run out of ideas follow the road; you'll get there.” – Edgar Allan Poe</span><span style="font-size:12pt"><u></u><u></u></span></p>
</div>
</div>
</div>
</blockquote>
</div>
</blockquote>
</div>
<p class="MsoNormal"><span style="font-size:12pt"><br clear="all">
<br>
<span class="m_8182954874377207856gmailsignatureprefix">-- </span><u></u><u></u></span></p>
<div>
<div>
<div>
<p class="MsoNormal"><span style="font-size:12pt">Peter Manzella<u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:12pt">PhD Candidate, Department of Physics and Astronomy<u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:12pt">309 Bennett Hall<u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:12pt">University of Maine<u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:12pt"><a href="mailto:peter.manzella@maine.edu" target="_blank">peter.manzella@maine.edu</a><u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:12pt"><u></u> <u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:12pt;font-family:"Arial",sans-serif">“If you run out of ideas follow the road; you'll get there.” – Edgar Allan Poe</span><span style="font-size:12pt"><u></u><u></u></span></p>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div></blockquote></div><br clear="all"><br><span class="gmail_signature_prefix">-- </span><br><div dir="ltr" class="gmail_signature"><div dir="ltr"><div>Peter Manzella<br></div><div>PhD Candidate, Department of Physics and Astronomy</div><div>309 Bennett Hall</div><div>University of Maine</div><div><a href="mailto:peter.manzella@maine.edu" target="_blank">peter.manzella@maine.edu</a></div><div><br></div><div><font face="arial, sans-serif">“If you run out of ideas follow the road; you'll get there.” – Edgar Allan Poe</font><br></div></div></div>